• Login
Shukti Chakravarti Lab
  • Home
  • About the PI
  • Research
  • People
  • Publications
  • News
  • Photos
  • Opportunities
  • Contact
  • Click to open the search input field Click to open the search input field Search
  • Menu Menu
awp-admin

About awp-admin

This author has not written his bio yet.
But we are proud to say that awp-admin contributed 23 entries already.

Entries by awp-admin

Early work on structural role of ECM proteoglycans

My early work defined lumican, a keratan sulfate proteoglycan of connective tissue ECMs of the cornea, tendon, skin, cartilage. These studies predate completion of the Human Genome Project, necessitating the purification of the lumican protein, establishing its N-terminal amino acid sequence, isolating genomic and cDNA clones and Sanger sequencing of the lumican gene. Subsequently, we generated gene-targeted lumican-deficient mice that developed cloudy cornea, and skin and tendon fragility due to abnormal collagen fibril structure (Chakravarti, 1998).

 Emerging role of ECM components in immune response and inflammation

Beyond tissue structure, we discovered that collagen-free lumican has a second role in modulating inflammation and immune response (Wu, 2007; Shao2013). Other related members of this proteoglycan family also have dual roles in tissue structure and cell signaling. Lumican interacts with cell surface proteins (integrins, caveolin-1 and CD14) on neutrophils, macrophages, and dendritic cells to promote toll-like receptor (TLR)-4 mediated innate inflammatory signals and defense against bacterial infections.

Human corneal organoids

We are exploring the use of human corneal organoids as a pre-animal model system to investigate human corneal development and disease. Matured for up to 4 months in culture, these human corneal organoids establish a layered ECM-rich cornea-like tissue (Foster, 2017). Single cell transcriptomic studies show all major corneal cell types (Maiti, 2022) and a cornea-like stromal extracellular matrix of collagens and proteoglycans (Ashworth, 2025).

Understanding keratoconus, a cell and ECM degenerative corneal disease

We investigate keratoconus, a corneal disease associated with ECM degeneration, scarring and vision loss. Affecting ~1 in 1000 people, it is the second-most-common cause for corneal transplants worldwide.

Our manuscript “Single cell RNA-seq of human cornea organoids identifies cell fates of a developing immature cornea” by Maiti, George and others is now in press in PNAS Nexcus.

October 28,2022 Our manuscript “Single cell RNA-seq of human cornea organoids identifies cell fates of a developing immature cornea” by Maiti, George and others is now in press in PNAS Nexcus.

Mackenzie Charter is going to graduate school this Fall. While we will miss her, we are proud of her. Good luck with your studies!

August 26, 2022 Mackenzie Charter is going to graduate school this Fall. While we will miss her, we are proud of her. Good luck with your studies!

Hailey Martinez just joined the group to help with our Keratoconus research. Welcome Hailey!

August 22, 2022 Hailey Martinez just joined the group to help with our Keratoconus research. Welcome Hailey!

Madison Glowacki just joined the group to help with our research on extracellular matrix and immune regulations. Welcome Madison!

August 1, 2022 Madison Glowacki just joined the group to help with our research on extracellular matrix and immune regulations. Welcome Madison!

Sean Ashworth, PhD Joins the Lab

June 13, 2022 Sean Ashworth, PhD from the School of Optometry and Vision Sciences, Cardiff University is joining the lab in September this year. Welcome Sean!

Extracellular matrix in the healthy cornea

A major focus in our laboratory is understanding the structure and functions of the cells and the ECM of the cornea. The transparent cornea provides two thirds of the refractive power of the eye and serves as a protective barrier through unique adaptations of the cells and the ECM. The stromal ECM connective tissue is a highly organized array of collagen fibrils and regulatory proteoglycans produced by a specialized fibroblast, the keratocytes. We are trying to understand properties of keratocytes, their development and whether they can be maintained in culture to produce a cornea-like stromal ECM.

Page 1 of 3123
Search Search

Contact

NYU Langone Health
Science Building, Room 507
435 East 30th Street
New York, NY 10016

Office: 646-501-8464
Lab: 646-501-8470

Shukti.Chakravarti@nyulangone.org

Join our Studies

Privacy Statement

© Copyright. Shukti Chakravarti Lab: Academic Web Pages
  • Home
  • About the PI
  • Research
  • People
  • Publications
  • News
  • Photos
  • Opportunities
  • Contact
Scroll to top Scroll to top Scroll to top